RIME Foreword

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Rime: Repeat identification

We present an algorithm for detecting long similar fragments occurring at least twice in a set of biological sequences. The problem becomes computationally challenging when the frequency of a repeat is allowed to increase and when a non-negligible number of insertions, deletions and substitutions are allowed. We introduce in this paper an algorithm, Rime1 (for Repeat Identification: long, Multi...

The RIME Prototype

In this paper we give a technical description of the PRIME system prototype. PRIME allows us to provide an operational side to the theoretical work we have done in the “Modelling and Multimedia Information Retrieval” (MRIM) team. PRIME is designed to provide a generic way to express the storing, manipulating and retrieval of multimedia data. These tasks are separated into two parts, namely the ...

R-matrices in Rime

We replace the ice Ansatz on matrix solutions of the Yang–Baxter equation by a weaker condition which we call rime. Rime solutions include the standard Drinfeld–Jimbo R-matrix. Solutions of the Yang–Baxter equation within the rime Ansatz which are maximally different from the standard one we call strict rime. A strict rime non-unitary solution is parameterized by a projective vector ~ φ. We sho...

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